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BioTool

Pathways & mechanisms

13 resources · Explore pathways and association networks, and perform functional enrichment.

KEGG

Look up biological pathways and functional annotations.
Pathways & networks
Database

Reactome

Browse and analyze biological pathways.
Pathways & networks
Database / online tool

STRING

Explore and analyze protein functional association networks.
Pathways & networks
Database / online tool

Metascape

Perform gene list enrichment and network analysis.
Functional enrichment
Online tool

g:Profiler

Perform functional enrichment and convert gene identifiers.
Functional enrichment
Online tool

Enrichr

Analyze gene set functional enrichment.
Functional enrichment
Online tool

Gene Ontology

Find molecular function, biological process and cellular component annotations.
Functional ontology
Database

BioGRID

Find curated genetic and protein interactions from the literature.
Molecular interactions
Database

IntAct

Find molecular interaction records and associated experimental information.
Molecular interactions
Database

WikiPathways

Browse community-curated biological pathways and their sources.
Pathway databases
Database

GSEA / MSigDB

Run gene set enrichment analysis and explore reference gene sets.
Gene set analysis
Software / database

DAVID

Annotate gene lists and perform functional enrichment analysis.
Annotation & enrichment
Online tool

Rhea

Find curated biochemical reactions and associated enzymes.
Biochemical reactions
Database